SOFTWARE TOOLS

Source code for the programs described below is available at my github profile page:

CHEMCOMMS-CALCULATOR

CAD tool that automatically identifies orthogonal chemical communication channels for the design of synthetic consortia

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Publication: Kylilis, N., Tuza, Z. A., Stan, G. B., & Polizzi, K. M. (2018). Tools for engineering coordinated system behaviour in synthetic microbial consortia. Nature communications, 9(1), 2677.

GENE-EXPRESSION-RATE-CALCULATOR

Matlab program for automatic calculation of gene expression rate from time-course fluorescence assays on microplate-reader for bacterial cells

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Unpublished

GROWTH-RATE-CALCULATOR

Matlab program for automatic calculation of bacterial growth rate in time-course microplate experiments

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Unpublished